simkovah | Institute of Experimental Botany of the Czech Academy of Sciences

Ing. Hana Šimková, CSc.

Email: simkovah@ueb.cas.cz
Tel.: +420 585 238 715
Fax: +420 585 205 853

Address:
Šlechtitelů 31, 783 71, Olomouc - Holice, Česká republika
Room number: 206

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Hana Šimková EN

Position:

senior scientist

Workgroup:

Centre of Plant Structural and Functional Genomics

Publications:

Number of publications: 129

2016

BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes

Staňková, H., Hastie, A.R., Chan, S., Vrána, J., Tulpová, Z., Kubaláková, M., Visendi, P., Hayashi, S., Luo, M., Batley, J., Edwards, D., Doležel, J., Šimková, H.
PLANT BIOTECHNOLOGY JOURNAL 14 1523-1531 2016 Fulltext: PDF link on intranet only
Construction of BAC libraries from flow-sorted chromosomes

Šafář, J., Šimková, H., Doležel, J.
Plant Cytogenetics: Methods and Protocols 135-149 2016 Fulltext: PDF link on intranet only
Flow analysis and sorting of plant chromosomes

Vrána, J., Cápal, P., Šimková, H., Karafiátová, M., Čížková, J., Doležel, J.
CURRENT PROTOCOLS IN CYTOMETRY 78 5.3.1-5.3.43 2016 Fulltext: PDF link on intranet only

2015

LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome

Barghini, E., Natali, L., Giordani, T., Cossu, R.M., Scalabrin, S., Cattonaro, F., Šimková, H., Vrána, J., Doležel, J., Morgante, M., Cavallini, A.
DNA RESEARCH 22 91-100 2015 Fulltext: PDF link on intranet only
New insights into the wheat chromosome 4D structure and virtual gene order, revealed by survey pyrosequencing

Helguera, M., Rivarola, M., Clavijo, B., Martis, M.M., Vanzetti, L.S., González, S., Garbus, I., Leroy, P., Šimková, H., Valárik, M., Caccamo, M., Doležel, J., Mayer, K.F.X., Feuillet, C., Tranquilli, G., Paniego, N., Echenique, V.
PLANT SCIENCE 233 200-212 2015 Fulltext: PDF link on intranet only
Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene

Staňková, H., Valárik, M., Lapitan, N.L.V., Berkman, P.J., Batley, J., Edwards, D., Luo. M.-Ch., Tulpová, Z., Kubaláková, M., Stein, N., Doležel, J., Šimková, H.
THEORETICAL AND APPLIED GENETICS 128 1373-1383 2015 Fulltext: PDF link on intranet only
The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements

Akpinar, B.A., Magni, F., Yuce, M., Lucas, S.J., Šimková, H., Šafář, J., Vautrin, S., Bergès, H., Cattonaro, F., Doležel. J., Budak, H.
BMC GENOMICS 16 453 2015 Fulltext: PDF link on intranet only
A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B

Kobayashi, F., Wu, J., Kanamori, H., Tanaka, T., Katagiri, S., Karasawa, W., Kaneko, S., Watanabe, S., Sakaguchi, T., Hanawa, Y., Fujisawa, H., Kurita, K., Abe, C., Iehisa, J.C.M., Ohno, R., Šafář, J., Šimková, H., Mukai, Y., Hamada, M., Saito, M., Ishikawa, G., Katayose, Y., Endo, T.R., Takumi, S., Nakamura, T., Sato, K., Ogihara, Y., Hayakawa, K., Doležel, J., Nasuda, S., Matsumoto, T., Handa, H.
BMC GENOMICS 16 595 2015 Fulltext: PDF link on intranet only
Genetic mapping of resistance to Diuraphis noxia (Kurdjumov) biotype 2 in wheat (Triticum aestivum L.) accession CI2401

Fazel-Najafabadi, M., Peng, J., Peairs, F.B., Šimková, H., Kilian, A., Lapitan, N.L.V.
EUPHYTICA 203 607-614 2015 Fulltext: PDF link on intranet only
Radiation hybrid maps of the D-genome of Aegilops tauschii and their application in sequence assembly of large and complex plant genomes

Kumar, A., Seetan, R., Mergoum, M., Tiwari, V.K., Iqbal, M.J., Wang, Y., Al-Azzam, O., Šimková, H., Luo, M.C., Dvorak, J., Gu, Y.Q., Denton, A., Kilian, A., Lazo, G.R., Kianian, S.F.
BMC GENOMICS 16 800 2015 Fulltext: PDF link on intranet only

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Institute of Experimental Botany of the Czech Academy of Sciences
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